Best way I've found is a 32oz cup with a hole cut in the lid, as mantisgirl13 said. I stop up the hole with a piece of foam. At feeding time, I remove the stopper and use a funnel to add flies.
I recommend a mesh cube like
this to use when you are separating nymphs or cleaning their enclosures. You can see through the mesh to do what you need to do while the nymphs can't escape. I also recommend labeling your containers with a count as to how many nymphs there are. This way, if you open it to clean or feed you can do a head count and make sure you didn't lose any nymphs. It also helps to track if you lose any to canibalism between feedings.
I use a small paintbrush (like the cheap, little plastic kind you give to kids) to help as a tool to seperate tiny nymphs. They can grab onto the paintbrush and you can transfer them without damaging their delicate, little bodies. I always call it a 'magic paintbrush ride' lol. Some are still difficult jerks and stagedive rather than grab the brush, but it is very helpful in nymph wrangling
Hope that is helpful. Congrats again on the hatch!